Table 2 Ten most frequently significant markers (Bonferroni correction)
From: Novel tree-based method to generate markers from rare variant data
Marker | Chromosome | Number of SNPs | Frequency (%) | Included genes |
|---|---|---|---|---|
405 | 13 | 18 | 10 | FLT1 |
529 | 19 | 39 | 8 | CYP4F22, CYP4F8, CYP4F3, CYP4F12, OR10H3, OR10H5, OR10H1, LOC646610, TPM4 |
528 | 19 | 30 | 5 | ZNF627, HSZFP36, ZNF440, ZNF700, ZNF763, LOC100129837, LOC729747, ZNF20, ZNF625, LOC730651, LOC100129686, ZNF563, ZNF564, ZNF490, ZNF791 |
207 | 7 | 10 | 5 | LOC100129126, LOC728927, ZNF680, ZNF107, ZNF138, ZNF138, ZNF273, ZNF273, ZNF92, GUSB |
439 | 16 | 21 | 4 | TPSD1 |
296 | 10 | 53 | 4 | TACC2 |
533 | 19 | 13 | 3 | LOC100130108, ZNF99, LOC646864, LOC645118, LOC100129543 |
363 | 11 | 65 | 3 | TYR, C11ORF75, MTMR2, TMEM133, MMP20, MMP27, CASP4, AASDHPPT, CUL5, ATM, LOC100128794, C11ORF53, BTG4, LAYN, PPP2R1B, TTC12, REXO2, FAM55B, BUD13, LOC283152, CBL, MFRP, USP2, TECTA, SORL1, PMP22CD, OR10S1, OR8G2, OR8D1, OR8D2, OR8B4, OR8B8, OR8A1, VSIG2, ESAM, CHEK1, PUS3, CDON, SRPR, DCPS, SNX19, HNT |
361 | 11 | 79 | 3 | RIC8A, OR10A2, ZNF214, NLRP14, PPFIBP2, CYB5R2, OR10A6, RPL27A, ASCL3, RNF141, TEAD1, PIK3C2A, KCNJ11, USH1C, SERGEF, MRGPRX4, SAA4, SAA2, BBOX1, FSHB, KIAA1542, POLR2L, TSPAN4, MUC2, MUC5AC, SLC22A18, OR52K1, OR52M1, OR51E1, OR51E2, OR51G1, OR51L1, OR52E2, HBB, SIRT3, OR51B2, OR51B5, OR51B6, OR51Q1, OR51I1, OR51I2, UBQLN3, UBQLNL, OR52B6, TRIM6, TRIM5, OR52N1, OR52N2, OR52E6, OR52E8, OR52E4, LOC390084, OR56A4, OR56A1, FXC1, C11ORF47, OR2AG2, OR2AG1, OR6A2 |
83 | 2 | 76 | 3 | COL6A3 |