Table 1 Comparisons of penalized likelihood methods and group ISIS procedures 1 and 2 at three different noise levels
From: Detection of rare functional variants using group ISIS
Noise level | Penalized likelihood method | Group ISIS procedure 1 | Group ISIS procedure 2 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Group MCP (with AIC) | Group MCP (with BIC) | Group LASSO (with AIC) | Group LASSO (with BIC) | Â | Group MCP (with AIC) | Group MCP (with BIC) | Group LASSO (with AIC) | Group LASSO (with BIC) |
Q1 | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Low | 45/4 | 8/4 | 168/1 | 168/1 | 12/5 | 8/5 | 5/4 | 4/4 | 4/4 |
Medium | 89/5 | 10/4 | 216/1 | 147/1 | 12/5 | 9/5 | 7/5 | 5/5 | 3/3 |
High | 233/3 | 121/3 | 233/1 | 177/1 | 12/2 | 24/2 | 22/2 | 13/2 | 13/2 |
Q2 | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Low | 41/12 | 9/6 | 101/6 | 37/6 | 15/12 | 13/12 | 7/7 | 11/11 | 9/7 |
Medium | 55/11 | 11/6 | 176/4 | 74/3 | 12/9 | 19/8 | 8/6 | 20/8 | 12/10 |
High | 250/8 | 125/5 | 259/1 | 259/1 | 15/0 | 35/1 | 33/1 | 19/1 | 24/1 |