Table 1 Number of replicates with true discovery for the causal genes before and after PCA adjustment
From: Effect of population stratification analysis on false-positive rates for common and rare variants
Gene | Indicator method | Proportion method | Adaptive-sum test method | |||
|---|---|---|---|---|---|---|
Before PCA | After PCA | Before PCA | After PCA | Before PCA | After PCA | |
ARNT | 0 | 0 | 0 | 0 | 0 | 0 |
ELAVL4 | 0 | 0 | 0 | 0 | 0 | 0 |
FLT1 | 33 | 12 | 33 | 12 | 67 | 15 |
FLT4 | 2 | 0 | 1 | 0 | 3 | 0 |
HIF1A | 0 | 0 | 0 | 0 | 0 | 0 |
HIF3A | 0 | 0 | 0 | 0 | 0 | 0 |
KDR | 94 | 17 | 160 | 50 | 163 | 53 |
VEGFA | 0 | 1 | 0 | 1 | 0 | 1 |
VEGFC | 15 | 8 | 15 | 8 | 15 | 8 |