Table 1 True variance contributions of 13 causal genes given in the GAW17 answers
From: Evaluation of a LASSO regression approach on the unrelated samples of Genetic Analysis Workshop 17
| Â | VNN3 | VNN1 | SREBF1 | BCHE | VLDLR | SIRT1 | PDGFD | LPL | PLAT | RARB | GCKR | VWF | INSIG1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Number of SNPs | 15 | 7 | 24 | 29 | 27 | 24 | 11 | 20 | 29 | 11 | 1 | 8 | 5 |
Number of causal SNPs | 7 | 2 | 10 | 13 | 8 | 9 | 4 | 3 | 8 | 2 | 1 | 2 | 3 |
Average MAF of the causal SNPs | 0.0206 | 0.0882 | 0.0022 | 0.0010 | 0.0013 | 0.0012 | 0.0029 | 0.0060 | 0.0021 | 0.0029 | 0.0122 | 0.0032 | 0.0007 |
Variance contribution | 0.0239 | 0.0193 | 0.0125 | 0.0115 | 0.0111 | 0.0100 | 0.0098 | 0.0097 | 0.0090 | 0.0048 | 0.0034 | 0.0021 | 0.0002 |