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Table 1 Characteristics of the studied genes

From: Comparative study of statistical methods for detecting association with rare variants in exome-resequencing data

Chromosome

Gene

K

MAF (%)

V

K (V) > 5%

5% >K (V) > 1%

K (V) < 1%

Causal genes

       

1

ARNT

18

0.07; 43.11

5

1 (0)

2 (1)

15 (4)

1

ELAVL4

10

0.07; 43.11

2

2 (0)

1 (0)

7 (2)

13

FLT1

35

0.07; 29.05

1

3 (1)

7 (2)

25 (8)

5

FLT4

10

0.07; 2.08

2

0 (0)

2 (0)

8 (2)

14

HIF1A

8

0.07; 1.2

4

0 (0)

1 (1)

7 (3)

19

HIF3A

21

0.07; 38.52

3

4 (0)

2 (0)

15 (3)

4

KDR

16

0.07; 16.5

10

1 (1)

1 (1)

14 (8)

6

VEGFA

6

0.07; 2.37

1

0 (0)

1 (0)

5 (1)

4

VEGFC

1

0.07; 0.07

1

0 (0)

0 (0)

1 (1)

Noncausal genes

       

1

PTGFR

16

0.07; 1.69

0

0

3

13

1

IFI44

22

0.07; 11.33

0

1

1

20

1

FAM73A

10

0.07; 0.5

0

0

0

10

17

MAPT

27

0.07; 35.58

0

5

7

15

1

CTSS

6

0.07; 33.28

0

1

1

4

5

FOXI1

15

0.07; 37.30

0

2

0

12

2

LY75

83

0.07; 45.91

0

11

12

60

  1. K, number of variants in gene; V, number of true causal variants in gene.