Identification of functional rare variants in genome-wide association studies using stability selection based on random collapsing

Table 4 Comparison of ranking approaches

Rank^a	Single-marker test	Collapsing method	CMC method	SORC method
1	FLT1 ^b	TBX18	FLT1 ^b	FLT1 ^b
2	OR2T34	FLT1 ^b	TBX18	BRWD1
3	LRRK2	AMPD3	AMPD3	KDR ^b
4	BRCA1	C8ORF31	C8ORF31	C14ORF159
5	PPP1R14BP1	SLCO1A2	ADAM7	C1ORF122
6	HSZFP36	ADAM7	TMEM67	ZNF502
7	C9ORF66	C9ORF66	SBF2	VEGFA ^b
8	ABL2	AIF1	KIAA0802	HNRPUL1
9	AIF1	SBF2	AIF1	FMNL3
10	RUNX2	FARP1	FARP1	AIF1

ISSN: 1753-6561