Resampling procedures to identify important SNPs using a consensus approach

BMC Proceedings

Table 2 Strongest correlations between false positives and genuine causal SNPs

Outcome	Identified SNP	Causal SNP	Correlation
Consensus models^a
Q1	C9S13	C4S1878	0.21
	C9S13	C4S1884	0.23
	C1S7427	C6S5380	0.22
	C12S2798	C6S5380	−0.28
	C8S2699	C6S5426	0.21
	C1S7427	C13S523	0.21
	C12S2798	C13S523	−0.27
	C12S7427	C14S3706	−0.27
Q4	C10S6324	C13S523	0.23
Affected	C19S3379	C4S1878	−0.21
	C18S2310	C6S5426	0.26
	C19S3379	C6S5426	0.22
GWAS for Q1^b	C12S707	C4S1878	0.27
	C12S711	C4S1878	0.28
	C12S707	C4S1884	0.26
	C12S707	C6S5380	0.21
	C12S711	C6S5380	0.21
	C12S2798	C6S5380	−0.28
	C12S707	C13S522	0.21
	C12S711	C13S522	0.21
	C12S707	C13S523	0.45
	C12S711	C13S523	0.4
	C12S2028	C13S523	0.32
	C12S2798	C13S523	−0.27
	C12S707	C14S1734	0.31
	C12S711	C14S1734	0.26
	C12S2028	C14S1734	0.25
	C12S707	C18S2492	0.41
	C12S711	C18S2492	0.26

ISSN: 1753-6561