Table 1 SNPs selected by the SMCP and LASSO models for trait Q1 in replicate 1
From: Regularized regression method for genome-wide association studies
SNP | Position | Gene | Univariate estimate | Univariate p-value | SMCP estimate | LOO p-value | LASSO estimate | LOO p-value |
|---|---|---|---|---|---|---|---|---|
C12S707 | 11065657 | PRR4 | 0.53 | 2.0 × 10−7 | 0.002 | 7.9 × 10−1 |  |  |
C12S711 | 11065733 | PRR4 | 0.61 | 7.6 × 10−8 | 0.007 | 3.0 × 10−1 |  |  |
C13S522 | 27899910 | FLT1 | 1.22 | 2.1 × 10−17 | 0.169 | 5.7 × 10−7 | 0.096 | 1.6 × 10−8 |
C13S523 | 27899912 | FLT1 | 0.94 | 2.6 × 10−22 | 0.173 | 6.2 × 10−10 | 0.134 | 1.6 × 10−13 |
C13S524 | 27899915 | FLT1 | 1.88 | 2.2 × 10−7 | 0.058 | 1.1 × 10−2 |  |  |