Table 1 Methods in the testing stage
From: SNP set analysis for detecting disease association using exon sequence data
Method | Model | Kernel | Common variants | Rare variants |
|---|---|---|---|---|
Logistic regression | Logistic regression | NA | Genotypes | WScombined |
Logistic common score | Logistic regression | NA | Common score | WScombined |
Linear rare WScombined | Kernel machine | Linear | Genotypes | WScombined |
Linear rare WSnonsyn | Kernel machine | Linear | Genotypes | WSnonsyn |
Quadratic rare WScombined | Kernel machine | Quadratic | Genotypes | WScombined |