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Table 2 Summary results for data set 1

From: Finding genes that influence quantitative traits with tree-based clustering

Q1

Q2

Gene

Q1 rank

Q1A rank

Q1B rank

p-value for Q1

p-value for Q1A

p-value for Q1B

Gene

Q2 rank

p-value for Q2

FLT1*

1

1

1

0.0000

0.0000

0.0000

LRRC18

1

0.000441

ZNF91

2

5

6

0.0000

0.0000

0.0002

WDFY4

2

0.000441

FLJ22662

3

22

900

0.0000

0.0000

0.2604

SPAG8

3

0.000453

ZNF454

4

3

27

0.0000

0.0000

0.0044

RARB*

24

0.004243

KRT3

5

12

134

0.0000

0.0000

0.0285

GCKR*

28

0.005489

MAP2K6

6

16

834

0.0000

0.0000

0.2360

VNN1*

42

0.00835

ZNF568

7

4

118

0.0000

0.0000

0.0244

BCHE*

358

0.063238

BRCA1

8

15

58

0.0000

0.0000

0.0115

SIRT1*

382

0.068709

RGPD8

9

7

140

0.0000

0.0000

0.0301

INSIG1*

391

0.07131

KDR*

14

2

15

0.0001

0.0000

0.0018

VNN3*

639

0.128922

VEGFC*

15

238

26

0.0001

0.0090

0.0044

LPL*

1,443

0.382003

VEGFA*

157

197

282

0.0086

0.0062

0.0717

PLAT*

1,833

0.514235

ELAVL4

312

729

1,248

0.0281

0.0983

0.3655

VWF*

2,071

0.59704

ARNT*

653

1,086

983

0.1025

0.2037

0.2872

PDGFD*

2,426

0.716842

FLT4*

1,352

788

1,757

0.3187

0.1173

0.5233

VLDLR*

2,691

0.811708

HIF1A*

1,563

998

1,660

0.3930

0.1814

0.4937

SREBF1*

2,891

0.883901

  1. All p-values based on 106 randomizations. Ranks are the rank of the genes when ordered by p-value. Genes with asterisks indicate true associations with trait. Genes were chosen on the basis of rank for Q1 analyses or of being true.
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BMC Proceedings

ISSN: 1753-6561

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