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Table 3 Summaries of repeatable significant results over 200 data sets

From: Finding genes that influence quantitative traits with tree-based clustering

Q1

Q1A

Q1B

Q2

Q4

Gene

n ≤ 0.01

Gene

n

Gene

n

Gene

n

Gene

n

FLT1

200

FLT1

200

FLT1

191

VNN1

67

BUD13

170

FLJ22662

192

KDR

200

KDR

135

OR5B2

48

SLC22A1

154

ZNF713

188

TERT

197

MAP2K7

135

PTGIS

39

SEPT1

129

KDR

187

ZNF713

196

FOXO3

133

ZNF568

38

CYP3A43

116

FOXO3

170

C1ORF147

194

HSZFP36

94

METTL2B

32

TOB2

115

KRT3

170

FLJ22662

194

EPHB1

90

GCKR

32

NF2

85

KRT75

164

OR6C4

192

LRP4

88

MUC19

31

NUP188

83

GRK1

162

PRKCH

192

RBM6

86

UNC45B

31

OR10T2

68

E2F2

157

ALX4

190

GRIA4

79

ZNF518B

31

C16ORF55

67

CETP

155

E2F2

189

FNDC3A

78

VNN3

29

ICAM4

65

TERT

155

ETV6

189

HIST2H2BE

73

SIRT1

25

LOC1001316

65

MAP2K6

154

KRT75

189

HAS3

72

BCHE

22

MYCBP

65

VEGFC

45

VEGFC

65

VEGFC

65

SREBF1

16

WBP1

65

ARNT

38

HIF1A

51

VEGFA

19

LPL

14

MUC3A

61

VEGFA

32

FLT4

51

ARNT

18

RARB

11

CNGA3

58

FLT4

51

VEGFA

32

FLT4

7

PDGFD

8

GTSE1

58

ELAVL4

15

ARNT

37

HIF1A

7

VLDLR

7

MMP27

58

HIF1A

12

ELAVL4

12

HIF3A

2

VWF

3

PIK3R2

58

HIF3A

3

HIF3A

2

ELAVL4

2

INSIG1

1

TAAR5

56

  1. All significant results are based on a noncorrected significance level of 0.01. Numbers are the number of replicates where a gene was found to be significant (out of 200). Columns show the top results and those from true genes (bold). The maximum number of significant tests for Q4A was 8. All significance tests are based on 105 permutations.
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BMC Proceedings

ISSN: 1753-6561

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