Identifying rare variants using a Bayesian regression approach

BMC Proceedings

Table 1 Association analysis for trait Q1

Gene	SNP	Regression coefficient	PPA	MAF
FLT1	C13S431	2.501 (2)	0.243 (3)	0.017217
	C13S522	2.188 (3)	0.264 (2)	0.027977
	C13S523	9.027 (1)	0.998 (1)	0.066714
ARNT	C1S6533	0.478 (6)	0.043 (4)	0.011478
KDR	C4S1884	0.126 (42)	0.016 (8)	0.020803

The third and fourth columns are the average regression coefficients and posterior probabilities of association (PPAs) out of 200 replications, respectively. The numbers in parentheses for the regression coefficients indicate the rank of the SNP based on sorting the absolute values of average regression coefficients in decreasing order. The numbers in parentheses for the PPAs indicate the rank of the SNP based on sorting the PPAs in decreasing order. We use the same notation in Table 2.

ISSN: 1753-6561