Linear models for breeding values prediction in haplotype-assisted selection - an analysis of QTL-MAS Workshop 2011 Data

Table 4 Correlations between true and predicted phenotypes

MODEL	true	FM	RM1	RM2	AM
true	1	0.4873 (0.4385, 0.5331)	0.7043 (0.6716, 0.7342)	0.7052 (0.6726, 0.7351)	0.6081 (0.5675, 0.6458)
FM	0.7145 (0.6924, 0.7353)	1	0.5396 (0.4942, 0.5821)	0.5443 (0.4991, 0.5865)	0.4306 (0.3787, 0.4797)
RM1	0.4872 (0.4531, 0.5200)	0.6819 (0.6577, 0.7047)	1	0.9972 (0.9968, 0.9975)	0.7631 (0.7360, 0.7879
RM2	0.4911 (0.4571, 0.5236)	0.6873 (0.6635, 0.7097)	0.9974 (0.9972, 0.9976)	1	0.7616 (0.7342, 0.7864)
AM	0.7315 (0.7105, 0.7513)	0.7174 (0.6955, 0.7381)	0.7921 (0.7751, 0.8078)	0.7939 (0.7771, 0.8096)	1

The correlations between true and predicted phenotypes for individuals with known phenotype (below diagonal). The correlations between true and predicted phenotypes for individuals with unknown phenotype (above diagonal). 95% confidence intervals for correlations are shown in brackets.

ISSN: 1753-6561