Table 1 Results for the region surrounding SNP at 47,956,424 bp using phenotypes as provided (Original) and after randomly redistributing them to individuals (Null).
From: Evaluation of logistic Bayesian LASSO for identifying association with rare haplotypes
SNP(bp) | MAF | Hap1 | Hap2 | Hap3 | Hap4 | Hap5 | Hap6 | Hap7 | Hap8 | Hap9 |
|---|---|---|---|---|---|---|---|---|---|---|
47,952,843 | 0.018 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
47,953,405 | 0.370 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
47,953,733 | 0.320 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
47,956,424 | 0.359 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
47,956,506 | 0.317 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
47,957,996 | 0.021 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
47,958,037 | 0.317 | 0 | 0 | 0 | 0 | 0 | 1∗ | 1∗ | 0 | 0 |
47,959,770 | 0.367 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 |
47,959,977 | 0.011 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Hap Freq | 0.63 | 0.011 | 0.011 | 0.011 | 0.003 | 0.296 | 0.021 | 0.007 | 0.011 | |
Original | NA | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.89 | 0.00 | 0.00 | |
Null | NA | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.02 | 0.00 | 0.00 |