Table 2 Top SNPs identified by the Random Forest and GRAMMAR-CG Approach for Trait 1
| Â | Â | Â | Trait 1 | Â | Â | Â | Â |
|---|---|---|---|---|---|---|---|
Random Forest method | Â | Â | Grammar_CG | Â | Â | ||
Multiple Trait EBV | Â | Multiple Trait EBV | Â | ||||
SNPname | CHR | pos Kb | Â | name | CHR | pos Kb | p-value |
SNP6499 | 4 | 24.900 | Â | SNP6499 | 4 | 24.900 | 3,6E-17 |
SNP4688 | 3 | 34.350 | Â | SNP1682 | 1 | 84.050 | 1,2E-07 |
SNP4674 | 3 | 33.650 | Â | SNP1683 | 1 | 84.100 | 4,4E-06 |
SNP4197 | 3 | 9.800 | Â | SNP6498 | 4 | 24.850 | 7,2E-06 |
SNP7145 | 4 | 57.200 | Â | SNP3585 | 2 | 79.200 | 1,1E-05 |
SNP1012 | 1 | 50.550 | Â | SNP6501 | 4 | 25.000 | 1,1E-05 |
SNP1614 | 1 | 80.650 | Â | SNP6469 | 4 | 23.400 | 8,4E-05 |
SNP6534 | 4 | 26.650 | Â | SNP9362 | 5 | 68.050 | 9,5E-05 |
Single Trait EBV | Â | Single trait EBV | Â | ||||
SNP6499 | 4 | 24.900 | Â | SNP6499 | 4 | 24.900 | 9,8E-16 |
SNP4688 | 3 | 34.350 | Â | SNP1682 | 1 | 84.050 | 9,8E-06 |
SNP4674 | 3 | 33.650 | Â | SNP6501 | 4 | 25.000 | 1,4E-05 |
SNP4197 | 3 | 9.800 | Â | SNP6498 | 4 | 24.850 | 3,0E-05 |
SNP1012 | 1 | 50.550 | Â | SNP1683 | 1 | 84.100 | 5,0E-05 |
SNP1614 | 1 | 80.650 | Â | SNP293 | 1 | 14.600 | 5,6E-05 |
Yield Deviation | Â | Yield Deviation | Â | ||||
SNP6499 | 4 | 24.900 | Â | SNP6499 | 4 | 24.900 | 1,9E-19 |
SNP1683 | 1 | 84.100 | Â | SNP1682 | 1 | 84.050 | 4,2E-09 |
SNP6507 | 4 | 25.300 | Â | SNP1683 | 1 | 84.100 | 2,8E-08 |
SNP1614 | 1 | 80.650 | Â | SNP6498 | 4 | 24.850 | 2,7E-07 |
SNP6506 | 4 | 25.250 | Â | SNP6501 | 4 | 25.000 | 6,9E-07 |
SNP4674 | 3 | 33.650 | Â | SNP6506 | 4 | 25.250 | 3,3E-06 |
SNP1682 | 1 | 84.050 | Â | SNP293 | 1 | 14.600 | 9,2E-06 |
SNP9374 | 5 | 68.650 | Â | SNP6507 | 4 | 25.300 | 2,7E-05 |
SNP1012 | 1 | 50.550 | Â | SNP1699 | 1 | 84.900 | 5,1E-05 |
SNP1685 | 1 | 84.200 | Â | SNP1161 | 1 | 58.000 | 7,6E-05 |