Table 3 Top SNPs identified by the Random Forest and GRAMMAR-CG Approach for trait 2
| Â | Â | Â | Trait 2 | Â | Â | Â | Â |
|---|---|---|---|---|---|---|---|
Random Forest method | Â | Â | Grammar_CG | Â | Â | ||
Multiple Trait EBV | Â | Multiple Trait EBV | Â | ||||
SNP name | CHR | pos Kb | Â | SNP name | CHR | Pos Kb | p-value |
SNP6499 | 4 | 24.900 | Â | SNP6499 | 4 | 24.900 | 1,93E-18 |
SNP7151 | 4 | 57.500 | Â | SNP293 | 1 | 14.600 | 3,51E-10 |
SNP298 | 1 | 14.850 | Â | SNP4044 | 3 | 2.150 | 6,38E-10 |
SNP2171 | 2 | 8.500 | Â | SNP298 | 1 | 14.850 | 4,07E-07 |
SNP293 | 1 | 14.600 | Â | SNP6501 | 4 | 25.000 | 1,79E-06 |
SNP9528 | 5 | 76.350 | Â | SNP6498 | 4 | 24.850 | 1,74E-05 |
SNP296 | 1 | 14.750 | Â | SNP296 | 1 | 14.750 | 8,60E-05 |
Single Trait EBV | Â | Single Trait EBV | Â | ||||
SNP6499 | 4 | 24.900 | Â | SNP6499 | 4 | 24.900 | 1,93E-19 |
SNP7151 | 4 | 57.500 | Â | SNP293 | 1 | 14.600 | 1,74E-09 |
SNP2171 | 2 | 8.500 | Â | SNP4044 | 3 | 2.150 | 1,24E-08 |
SNP298 | 1 | 14.850 | Â | SNP298 | 1 | 14.850 | 1,12E-06 |
SNP293 | 1 | 14.600 | Â | SNP6501 | 4 | 25.000 | 1,17E-06 |
SNP9528 | 5 | 76.350 | Â | SNP6498 | 4 | 24.850 | 8,61E-06 |
Yield Deviation | Â | Yield Deviation | Â | ||||
SNP6499 | 4 | 24.900 | Â | SNP6499 | 4 | 24.900 | 2,90E-24 |
SNP293 | 1 | 14.600 | Â | SNP293 | 1 | 14.600 | 1,21E-11 |
SNP298 | 1 | 14.850 | Â | SNP6501 | 4 | 25.000 | 2,34E-08 |
SNP296 | 1 | 14.750 | Â | SNP298 | 1 | 14.850 | 4,93E-08 |
SNP6507 | 4 | 25.300 | Â | SNP6498 | 4 | 24.850 | 7,76E-08 |
SNP6506 | 4 | 25.250 | Â | SNP4044 | 3 | 2.150 | 3,19E-07 |
SNP6425 | 4 | 21.200 | Â | SNP296 | 1 | 14.750 | 1,58E-06 |
SNP9374 | 5 | 68.650 | Â | SNP6506 | 4 | 25.250 | 2,80E-06 |
SNP295 | 1 | 14.700 | Â | SNP295 | 1 | 14.700 | 3,81E-06 |
SNP7151 | 4 | 57.500 | Â | SNP6503 | 4 | 25.100 | 1,66E-05 |
| Â | Â | Â | Â | SNP6507 | 4 | 25.300 | 2,37E-05 |
| Â | Â | Â | Â | SNP6504 | 4 | 25.150 | 5,45E-05 |
| Â | Â | Â | Â | SNP6502 | 4 | 25.050 | 8,14E-05 |
| Â | Â | Â | Â | SNP9362 | 5 | 68.050 | 8,14E-05 |