Characteristics of equipartition for RNA structure

BMC Proceedings

Table 1 Distribution of domains for synthetic RNA with more than two domains

Sequences	L	D 1	D 2	D 3	D 4	D 5	D 6	R 1	R 2	R 3	R4	R 5	R 6
PDB_00195	84	1-28	29-56	57-84				0.33	0.66	1.0
PDB_00262	48	1-16	17-32	33-48				0.33	0.66	1.0
PDB_00754	55	1-17	18-37	38-54				0.32	0.69	1.0
PDB_01250	156	15-52	53-104	105-156				0.32	0.69	1.0
PDB_01060	64		17-32	33-48	49-64				0.5	0.75	1.0
PDB_00175	96	1-24	25-48	49-64	65-96			0.25	0.5	0.75	1.0
PDB_00873	96	1-24	25-48	49-64	65-96			0.25	0.5	0.75	1.0
PDB_00447	120	1-30	41-60	71-90	101-120			0.25	0.5	0.75	1.0
PDB_00340	140	1-35	36-70	71-105	106-140			0.25	0.5	0.75	1.0
PDB_01061	80	1-16	33-48	49-64	65-80			0.2	0.4	0.6	0.8	1.0
PDB_00370	175	1-35	36-70	71-105	106-140	141-175		0.2	0.4	0.6	0.8	1.0
PDB_01249	150	1-25	26-50	51-75	76-100	101-125	126-150	0.17	0.33	0.5	0.67	0.83	1.0

L is the length of the sequence, D1-D6 are the domains of the sequence, R1-R6 are the ratios of 3'-end of domains to the length of sequence. The domain is expressed as the 5'-end and 3'-end.

ISSN: 1753-6561