Characteristics of equipartition for RNA structure

BMC Proceedings

Table 3 Distribution of multiple sub-domains for synthetic RNA with one domain

Sequences	L	H1	H2	H3	SD1	SD2	SD3	D	R 1	R 2	R 3
PDB_01111	75	7-38	40-68		7-38	39-68		7-68	0.52	0.48
PDB_01112	75	7-39	41-68		7-39	40-68		7-68	0.53	0.47
PDB_01114	76	7-39	41-69		7-39	41-69		7-69	0.52	0.48
PDB_01115	74	7-36	40-66		7-36	37-67		7-67	0.49	0.51
PDB_01116	69	7-37	39-62		7-37	38-62		7-62	0.55	0.45
PDB_00522	48	8-18	19-32	34-43	6-18	19-32	33-44	6-44	0.33	0.36	0.31
PDB_00750	155	5-19	21-32	35-151	5-20	21-34	35-151	5-151	0.11	0.1	0.79

L is the length of the sequence, H1-H3 are the helixes of the sequence, D is the domain of the sequence, SD1-SD3 are the sub-domains of the domain, R1-R3 are the length ratios of SD1-SD3 to D. The helix data is the closed base pair or the start and end bases in pseudokont. The domain is expressed as 5'-end and 3'-end of the internal section except of closed helix or pseudokont.

ISSN: 1753-6561