Characteristics of equipartition for RNA structure

BMC Proceedings

Table 5 Distribution of sub-domains for tRNA with one domain and multiple sub-domains

Sequences	L	H1	H2	H3	SD1	SD2	SD3	D	R 1	R 2	R 3
NDB_00051	75	10-25	26-44	48-64	8-25	26-44	45-64	8-64	0.32	0.33	0.35
PDB_00045	76	10-25	26-44	48-65	8-25	26-45	46-65	8-65	0.31	0.34	0.34
PDB_00070	76	10-25	26-44	48-65	8-25	26-45	46-65	8-65	0.31	0.34	0.34
PDB_00095	75	10-25	26-43	48-64	8-25	26-44	45-64	8-64	0.32	0.33	0.35
PDB_00229	75	10-24	25-43	48-64	8-24	25-44	45-64	8-64	0.30	0.35	0.35
PDB_00244	73	10-25	26-44	48-64	8-25	26-44	45-64	8-64	0.32	0.33	0.35
PDB_00259	72	10-25	26-44	48-64	8-25	26-44	45-64	8-64	0.32	0.33	0.35
PDB_00313	74	10-24	26-42	47-63	8-25	26-44	45-63	8-63	0.32	0.34	0.34
PDB_00376	73	9-23	24-42	46-62	7-23	24-42	43-62	7-62	0.30	0.34	0.36
PDB_00426	74	9-23	24-41	47-63	7-23	24-43	44-63	7-63	0.30	0.35	0.35
PDB_00903	76	10-25	26-44	49-65	8-25	26-45	46-65	8-65	0.31	0.34	0.34
PDB_00999	70	10-26	27-45	50-64	5-26	27-47	48-67	5-67	0.35	0.33	0.32

L is the length of the sequence, H1-H3 are the helixes of the sequence, D is the domain of the sequence, SD1-SD3 are the sub-domains of the domain, R1-R3 are the length ratios of SD1-SD3 to D. The helix data is the closed base pair or the start and end bases in pseudokont. The domain is expressed as 5'-end and 3'-end of the internal section except of closed helix or pseudokont.

ISSN: 1753-6561