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Table 1 Transcripts for whom their variation in expression levels can be explained by a covariance kernel composed by SNP with FP estimates, at genome-wide significance

From: Finding potential cis-regulatory loci using allele-specific chromatin accessibility as weights in a kernel-based variance component test

Transcript

Covariance kernel

Non-weighted

Weighted

h2r

h2r_p

geff

geff_p

h2r

h2r_p

Geff

geff_p

GI_42544126-I

0.0000

0.5000

0.7074

4.03E-15

0.0000

0.5000

0.7145

4.55E-18

GI_23097237-S

0.0000

0.5000

0.7848

1.15E-14

0.0000

0.5000

0.7493

7.46E-12

GI_10863968-S

0.0000

0.5000

0.6109

5.68E-10

0.0000

0.5000

0.6122

9.05E-11

Hs.283934-S

0.0746

0.3138

0.8382

9.77E-10

0.1497

0.1443

0.7657

4.87E-09

GI_12056480-A

0.2357

0.0457

0.7069

1.69E-08

0.2792

0.0194

0.6628

5.43E-08

GI_20986517-S

0.0000

0.5000

0.7671

5.58E-08

0.0000

0.5000

0.7726

3.08E-08

Hs.58104-S

0.2230

0.0753

0.6886

6.89E-07

0.2705

0.0333

0.6415

8.47E-07

GI_41393558-I

0.0000

0.5000

0.5331

1.92E-06

0.0000

0.5000

0.5371

1.73E-06

GI_4506738-S

NA

0.0000

0.5000

0.4758

6.66E-07

GI_15451941-S

NA

0.2611

0.0441

0.6090

1.33E-06

  1. geff, Gene-specific effect estimate (h 2 geff)
  2. geff_p, significance of the gene-specific effect estimate
  3. h2r, trait heritability estimate (h 2)
  4. h2r_p, significance of the trait heritability estimate
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BMC Proceedings

ISSN: 1753-6561

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