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Table 3 Significant haplotypes on MAP4 gene by LBL

From: Association of rare haplotypes on ULK4 and MAP4 genes with hypertension

SNP# in haplotype block

Location

Hap name

Hap freq

LBL (OR)

LBL (BF)

Haplo GLM (p value)

Haplo score (p value)

Haplo score overall test (p value)

11–15

47956424–47969734

10000

0.0041

2.467

3.190*

0.011*

0.010*

0.089

  1. Major allele is coded as zero. SNP# corresponds to the order of SNP in the gene among SNPs with MAF ≥0.001 and no more than 25 % missing genotypes
  2. Hap haplotype, Hap freq, haplotype frequency (obtained from hapassoc)
  3. *Significant BF or p value
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BMC Proceedings

ISSN: 1753-6561

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