- Poster presentation
- Open Access
Variation in gene expression profile with aging of Pinus radiataD. Don
© Alvarez et al; licensee BioMed Central Ltd. 2011
- Published: 13 September 2011
- Cell Wall Synthesis
- Chromosome Condensation
- Epigenetic Variation
- RUBISCO Activase
- Juvenile Plant
Phase change in higher plants, from juvenile to mature, affects the reproductive competence, morphology and growth rate, as well as the regenerative potential of tissue explants. However, in conifers these changes can be achieved before the onset of flowering and at the beginning of the seed production. Early maturational changes in conifers are very obvious, severe and overall irreversible , and are characterized by lost of morphogenetic capacity. This may affect clonal multiplication programs and genetic manipulation, due mainly to the decline in adventitious rooting capacity which is the most marked maturation and aging effect. Despite the serious effects of these processes, little is known about their basic regulation in forest clonal propagation programs. The latest researches regarding this subject are related to auxins changes during maturation , epigenetic variations during phase-change, like DNA methylation , and proteomic changes during needle maturation . This work has been performed to gain deeper insight into the genetic mechanisms that regulates the loss of morphogenetic capacity with the aging process in P. radiata.
P. radiata ortets of different age were brought from La Posada nursery at BioBio region, Chile. Needles were collected in August, frozen in liquid nitrogen and stored at -80°C until its RNA extraction. RNA was isolated from 100 mg of frozen tissue according to Chang , the RNA extracts were purified with RNeasy Clean up and treated with RNase-free DNase (both from QIAGEN). Gene expression analysis was done by a reverse dot blot hybridization technique by comparing the transcription levels of 174 genes in 1, 3 and 5 years old ortets using the methodology described by Valledor et al.. The 174 genes analyzed were classified into categories being the most important: Chloroplast and photosynthesis, protein translation folding, modification and degradation and proteins involved in transcription and DNA replication. Gene expression was quantified as signal intensity using the Gel Pro-analyzer 3.1.The values were normalized dividing every spot intensity by the average of the intensity of each membrane.
Transcription regulated protein family were mainly over expressed in 1 year old ortets. It is the case of the chromosome condensation gene regulator (RCC1) (figure 1), which inhibit the chromosome condensation until G2 phase of the cell cycle and is required for the formation of the mitotic spindle .This result indicates that 1 year old ortets are more transcriptionally active. Likewise, proteins like Putative valyl-tRNA synthase and T-complex polypeptide protein like (TCP-1) (figure 1), involved in processes of protein modification and translation, were up-regulated in 1 year old ortets, indicating that juvenile plants are more active at protein synthesis and modification level. In contrast 5 year old ortets presented a down-regulation in these genes expression. Additionally, in 5 year old radiata pines genes like histidine-rich glycoproteins (figure 1) were up-regulated, this type of protein have been found to be a component of the cell wall, like histidine-rich extensin in Zea mays , this is consistent with the increase in cell wall synthesis in older plants.
Thus, this work has provided an initial insight of the pathways and mechanisms that may be involved in the loss of morphogenetic capacity caused by aging in P. radiata ortets. Juvenile ortets showed higher expression in proteins related with transcription activators, photosynthesis and carbon and carbohydrate metabolism, while older P. radiata ortets showed a down-regulation in the same genes and a increase in genes related to cell wall synthesis, indicating that these might be candidates genes to be markers of the aging and maturation process, results that will be complemented and validated with qRT-PCR and proteome studies.
- Diaz-Sala C, Hutchinson K, Greenwood M: Maturation-related loss in rooting competence by loblolly pine stem cuttings: The role of auxin transport, metabolism and tissue sensitivity. Physiol Plant. 1996, 97: 481-490. 10.1111/j.1399-3054.1996.tb00507.x.View ArticleGoogle Scholar
- Greenwood M, Cui X, Xu F: Response to auxin changes during maturation-related loss of adventitious rooting competence in loblolly pine (Pinus taeda) stem cuttings. Physiol Plant. 2001, 111: 373-380. 10.1034/j.1399-3054.2001.1110315.x.View ArticlePubMedGoogle Scholar
- Fraga M, Cañal M, Rodríguez R: Phase-change related epigenetic and physiological changes in Pinus radiata D. Don. Planta. 2002, 215: 672-678. 10.1007/s00425-002-0795-4.View ArticlePubMedGoogle Scholar
- Valledor L, Jorrín J, Rodríguez J, Meijón M, Cañal M: Combined proteomic and transcriptomic analysis identifies differentially expressed pathways associated to Pinus radiata needle maturation. J Proteome Res. 2010, 9: 3954-3979. 10.1021/pr1001669.View ArticlePubMedGoogle Scholar
- Chang S, Puryear J, Cairney J: A simple and efficient method for isolating RNA from pine trees. Plant Mol Biol Rep. 1993, 11: 113-116. 10.1007/BF02670468.View ArticleGoogle Scholar
- Grulke N, Miller P: Changes in gas exchange characteristics during the life span of giant sequoia: implications for response to current and future concentrations of atmospheric ozone. Tree Physiol. 1994, 14: 659-668.View ArticlePubMedGoogle Scholar
- Fredericksen T, Steiner K, Skelly J, Kolb T, Kouterick K: Diel and seasonal patterns of leaf gas exchange and xylem water potentials of different-sized prunus serotina trees. Forest Sci. 1996, 42: 359-365.Google Scholar
- Hao Y, Macara I: Regulation of chromatin binding by conformational switch in the tail of the Ran exchange factor RCC1. J Cell Biol. 2008, 182: 827-836. 10.1083/jcb.200803110.PubMed CentralView ArticlePubMedGoogle Scholar
This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.