Articles

Page 28 of 71

Effect of conformation sampling strategies in genetic algorithm for multiple protein docking

Macromolecular protein complexes play important roles in a cell and their tertiary structure can help understand key biological processes of their functions. Multiple protein docking is a valuable computationa...

Authors: Juan Esquivel-Rodríguez and Daisuke Kihara

Citation: BMC Proceedings 2012 6(Suppl 7):S4

Content type: Proceedings Published on: 13 November 2012

This article is part of a Supplement: Volume 6 Supplement 7
- View Full Text
- View PDF
Identifying stage-specific protein subnetworks for colorectal cancer

In recent years, many algorithms have been developed for network-based analysis of differential gene expression in complex diseases. These algorithms use protein-protein interaction (PPI) networks as an integr...

Authors: Sinan Erten, Salim A Chowdhury, Xiaowei Guan, Rod K Nibbe, Jill S Barnholtz-Sloan, Mark R Chance and Mehmet Koyutürk

Citation: BMC Proceedings 2012 6(Suppl 7):S1

Content type: Proceedings Published on: 13 November 2012

This article is part of a Supplement: Volume 6 Supplement 7
- View Full Text
- View PDF
RNA-Seq analysis of two brain regions vulnerable to Alzheimer's disease

Authors: Xinkun Wang

Citation: BMC Proceedings 2012 6(Suppl 6):P53

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Simple and precise targeted editing of the human genome using rAAV-mediated homologous recombination

Authors: Christopher J Torrance

Citation: BMC Proceedings 2012 6(Suppl 6):P51

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Dirichlet process model for joint haplotype inference and GWAS

Authors: Avinash Das Sahu and Sridhar Hannenhalli

Citation: BMC Proceedings 2012 6(Suppl 6):P49

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Abstract not submitted for online publication

Authors:

Citation: BMC Proceedings 2012 6(Suppl 6):P47

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Apoptotic gene expression in melanoma cells treated with kaurenic acid

Authors: María B Rivero, Hernán J Mendoza, Miguel AChiurillo and Miriam C Sosa-Seguera

Citation: BMC Proceedings 2012 6(Suppl 6):P45

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Massively parallel sequencing of formalin-fixed paraffin-embedded tissues

Authors: Rachel L Erlich, Emanuele Palescandolo, Robert T Jones, Ashwini Sunkavalli, Alina Raza, Matthew Ducar, Charles Hatton, Christina Go, Christine Roden, Megan Hanna, Adri Mills, Ravali Adusumilli, Prateek Kumar, Priscilla K Brastianos, Matthew L Meyerson, William C Hahn…

Citation: BMC Proceedings 2012 6(Suppl 6):P40

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Metastatic outgrowth encompasses COL-I, FN1 and POSTN upregulation and assembly to fibrillar networks regulating cell adhesion, migration and growth

Authors: J Soikkeli, M Yin and E Hölttä

Citation: BMC Proceedings 2012 6(Suppl 6):P39

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations

Authors: Hue Vuong, Robert M Stephens and Natalia Volfovsky

Citation: BMC Proceedings 2012 6(Suppl 6):P37

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Next-generation sequencing at Merck-Boston

Authors: Richard Stevens

Citation: BMC Proceedings 2012 6(Suppl 6):P36

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Exome sequencing identifies somatic point mutations associated with acquired endocrine resistance in breast cancer cell lines

Authors: Natasja S Ehlers, Zhu Shi Da, Daniel Elias, Xue Lin, Jian Li, Christina Bjerre, Nils Brunner, Lars Bolund, Wang Jun, Ramneek Gupta and Henrik J Ditzel

Citation: BMC Proceedings 2012 6(Suppl 6):P35

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Dissecting the genetic architecture of coronary artery disease by genome engineering

Authors: David J Segal, Mital S Bhakta, Kumitaa Theva Das, Chongxiu Sun, Natalie M Grace, Jan A Nolta, Anne A Knowlton, David M Rocke and Scott I Simon

Citation: BMC Proceedings 2012 6(Suppl 6):P34

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Targeted genome reconstruction strategy for endosymbionts in eukaryotic genomes

Authors: Surya Saha, Wayne B Hunter and Magdalen Lindeberg

Citation: BMC Proceedings 2012 6(Suppl 6):P33

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Transcriptomics analysis revealed an indirect effect of aqueous cigarette smoke extract in promoting the adhesion of monocytic cells to endothelial cells

Authors: Carine Poussin, Inka Gallitz, Walter Schlage, Yvonne Steffen, Katrin Stolle, Stephan Lebrun, Julia Hoeng and Michael Lietz

Citation: BMC Proceedings 2012 6(Suppl 6):P32

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Towards a patient-based drug discovery

Authors: Stuart L Schreiber

Citation: BMC Proceedings 2012 6(Suppl 6):O30

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Comparative analysis of strand-specific RNA sequencing approaches

Authors: Daniela Munafo, Ping Liu, Christine Sumner, Erbay Yigit, Landon Merrill, Lynne Apone, Brad Langhorst, Fiona Stewart, Eileen T Dimalanta and Theodore Davis

Citation: BMC Proceedings 2012 6(Suppl 6):P30

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Development of a computational strategy to compare repetitive element enrichment between experimental conditions from high-throughput sequencing datasets

Authors: Steven Criscione and Nicola Neretti

Citation: BMC Proceedings 2012 6(Suppl 6):O29

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Epigenetic reprogramming in the epithelial-to-mesenchymal transition

Authors: Stephen Hoang, Marcin Cieślik, Sanjay Chodaparambil, Natalya Baranova, Manish Kumar, David Allison, Jake Wamsley, Lisa Gray, Marty Mayo and Stefan Bekiranov

Citation: BMC Proceedings 2012 6(Suppl 6):O28

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Enhancer network revealed by correlated DNAse HS states of enhancers

Authors: Justin Malin, Radhouane Aniba and Sridhar Hannenhalli

Citation: BMC Proceedings 2012 6(Suppl 6):P28

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Ultra-high resolution mapping of protein-genome interactions using ChIP-exo

Authors: B Franklin Pugh

Citation: BMC Proceedings 2012 6(Suppl 6):O27

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Folding principles of genomes

Authors: Job Dekker

Citation: BMC Proceedings 2012 6(Suppl 6):O26

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
A fast solution to NGS library preparation with low nanogram DNA input

Authors: Pingfang Liu, Gregory JS Lohman, Eric Cantor, Bradley W Langhorst, Erbay Yigit, Lynne M Apone, Daniela B Munafo, Christine Sumner, Fiona J Stewart, Thomas C Evans Jr, Nicole M Nichols, Eileen T Dimalanta and Theodore B Davis

Citation: BMC Proceedings 2012 6(Suppl 6):P26

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
The hunt for mammalian epialleles

Authors: Vardhman Rakyan

Citation: BMC Proceedings 2012 6(Suppl 6):O25

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Exploring the cancer methylome

Authors: Benjamin P Berman, Daniel J Weisenberger, Toshinori Hinoue, Houtan Noushmehr, Yaping Liu, Joseph F Aman, Toshinori Hinoue, Hui Shen, Simeen Malik, Swapna Mahurkar, Timothy Triche Jr, Zachary Ramjan, Charles M Nicolet, David Van Den Berg, Leslie Cope, James G Herman…

Citation: BMC Proceedings 2012 6(Suppl 6):O24

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Extended homozygous haplotypes at genes involved in brain development associated with autism

Authors: Ping-I Lin

Citation: BMC Proceedings 2012 6(Suppl 6):P24

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Analysis of somatic retrotransposition in human cancers

Authors: Eunjung Lee, Rebecca Iskow, Lixing Yang, Omer Gokcumen, Psalm Haseley, Lovelace J Luquette III, Jens G Lohr, Christopher C Harris, Li Ding, Richard K Wilson, David A Wheeler, Richard A Gibbs, Raju Kucherlapati, Charles Lee, Peter V Kharchenko and Peter J Park

Citation: BMC Proceedings 2012 6(Suppl 6):O23

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
MutaScope: a high-sensitivity variant caller dedicated to high-throughput PCR amplicons sequencing

Authors: Shawn Yost, Hakan Alakus, Hiroko Matsui, Kristen Jepsen, Richard Schwab, Kelly Frazer and Olivier Harismendy

Citation: BMC Proceedings 2012 6(Suppl 6):O22

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Investigation of retroviral integration preference via high-throughput sequencing

Authors: Matthew C LaFave, Gaurav K Varshney and Shawn M Burgess

Citation: BMC Proceedings 2012 6(Suppl 6):P22

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Abstract not submitted for online publication

Authors:

Citation: BMC Proceedings 2012 6(Suppl 6):O20

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Abstract not submitted for online publication

Authors:

Citation: BMC Proceedings 2012 6(Suppl 6):P20

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Abstract not submitted for online publication

Authors:

Citation: BMC Proceedings 2012 6(Suppl 6):O19

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Abstract not submitted for online publication

Authors:

Citation: BMC Proceedings 2012 6(Suppl 6):O18

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Deploying next-generation sequencing in a hospital setting

Authors: Lars GT Jorgensen and Katherine Siminovitch

Citation: BMC Proceedings 2012 6(Suppl 6):P18

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Interrogating of cancer genomes: towards more profile-based therapeutics

Authors: John David Carpten

Citation: BMC Proceedings 2012 6(Suppl 6):O16

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
In silico drug screening and potential target identification for hepatocellular carcinoma using support vector machine

Authors: Wu-Lung R Yang, Yu-En Lee, Ming-Huang Chen, Yu-Wen Liu, Pei-Ying Lee, Kun-Mao Chao and Chi-Ying F Huang

Citation: BMC Proceedings 2012 6(Suppl 6):P16

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Analyzing genomes: is there a duty to disclose?

Authors: Amy McGuire

Citation: BMC Proceedings 2012 6(Suppl 6):O14

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
An integrative genomics approach for mapping the emerging genetic susceptibility landscape of triple-negative breast cancer

Authors: Chindo Hicks, Antonio Pannuti, Kandis Backus and Lucio Miele

Citation: BMC Proceedings 2012 6(Suppl 6):P14

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Characterizing epistatic hotspots of human disease

Authors: Tallulah Andrews and Caleb Webber

Citation: BMC Proceedings 2012 6(Suppl 6):O12

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Abstract not submitted for online publication

Authors:

Citation: BMC Proceedings 2012 6(Suppl 6):P12

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Abstract not submitted for online publication

Authors:

Citation: BMC Proceedings 2012 6(Suppl 6):O10

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Genome-wide analysis of primate and rodent protein-coding and associated non-coding nucleotide sequences

Authors: Sudhindra R Gadagkar and Luke A Rond

Citation: BMC Proceedings 2012 6(Suppl 6):P9

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
De novo diagnostics of patients with intellectual disability

Authors: Joris A Veltman

Citation: BMC Proceedings 2012 6(Suppl 6):O9

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Major differences in microRNA quantification are platform and sequence dependent

Authors: Ester Feldmesser, Dena Leshkowitz, Yisrael Parmet and Shirley Horn-Saban

Citation: BMC Proceedings 2012 6(Suppl 6):P7

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Whole-genome sequencing and disease-gene detection

Authors: Lynn B Jorde

Citation: BMC Proceedings 2012 6(Suppl 6):O7

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Integration of a standardized pharmacogenomic platform for clinical decision support at Boston Children's Hospital

Authors: Catherine Brownstein, Vincent A Fusaro, Sarah Savage, Catherine Clinton, Kenneth Mandl, David Margulies, Wendy Wolf and Shannon Manzi

Citation: BMC Proceedings 2012 6(Suppl 6):P5

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Abstract not submitted for online publication

Authors:

Citation: BMC Proceedings 2012 6(Suppl 6):O5

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Targeted next-generation sequencing of colorectal cancer identified metastatic specific genetic alterations

Authors: A Rose Brannon, Efsevia Vakiani, Sasinya Scott, Brooke Sylvester, Krishan Kania, Agnes Viale, David Solit and Michael Berger

Citation: BMC Proceedings 2012 6(Suppl 6):P3

Content type: Poster presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Pathway-based analysis of mutation impact

Authors: Joshua Stuart

Citation: BMC Proceedings 2012 6(Suppl 6):O3

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF
Abstract not submitted for online publication

Authors:

Citation: BMC Proceedings 2012 6(Suppl 6):O1

Content type: Oral presentation Published on: 1 October 2012

This article is part of a Supplement: Volume 6 Supplement 6
- View Full Text
- View PDF

How was your experience today?

Rating Please select one rating

Awful

Bad

Good

Great

Thank you for your feedback.

Tell us why (opens in a new tab)

Articles

Follow

Annual Journal Metrics

BMC Proceedings

Contact us